I think the treatment might be working.  Two days a week I have the antibiotic served up to me in an IV, the rest of the week it's orally.  The pain is lessening (or I am getting used to it), the memory issues and brain fog are slowly dissipating except for the afternoons after the IV treatment.  The IV dose was doubled on my last visit, which has left me with nausea, but I can deal with that.  I have been doing more with my days and sleeping less. 
What I can't decide is is this all a good thing or a bad thing.  Or just something that will pass shortly.  In a few short weeks I have another follow up.  Will they increase the dose again as it seems my body adapts pretty well after the initial 2 weeks or will it remain the same?  Either way I think I am remembering what it was like to be a functioning human and look forward to being one again in the near future.